# genome (all hs1 chromosomes)	3117292070
# genome without chrY	3054832041
group	copies	bases	pct_genome
TE:all	3725794	1429492481	45.86
class:DNA	455388	109084623	3.50
class:LINE	1010932	645654340	20.71
class:LTR	526210	272279630	8.73
class:RC	1799	439148	0.01
class:Retroposon	5055	4299208	0.14
class:SINE	1726410	398214724	12.77
family:DNA/Crypton	313	44971	0.00
family:DNA/Crypton-A	151	20745	0.00
family:DNA/Kolobok	217	41052	0.00
family:DNA/MULE-MuDR	2059	804507	0.03
family:DNA/Merlin	218	39514	0.00
family:DNA/PIF-Harbinger	397	66639	0.00
family:DNA/PiggyBac	2082	540899	0.02
family:DNA/TcMar	210	46088	0.00
family:DNA/TcMar-Mariner	14972	2879846	0.09
family:DNA/TcMar-Pogo	30	3495	0.00
family:DNA/TcMar-Tc1	688	133042	0.00
family:DNA/TcMar-Tc2	6750	1657576	0.05
family:DNA/TcMar-Tigger	103020	38046270	1.22
family:DNA/hAT	2925	540317	0.02
family:DNA/hAT-Ac	5686	838518	0.03
family:DNA/hAT-Blackjack	15554	2546645	0.08
family:DNA/hAT-Charlie	232047	46896892	1.50
family:DNA/hAT-Tag1	1869	524610	0.02
family:DNA/hAT-Tip100	57994	12246191	0.39
family:DNA/hAT-hAT19	2	86	0.00
family:LINE/CR1	53449	12061717	0.39
family:LINE/Dong-R4	457	113501	0.00
family:LINE/I-Jockey	203	22388	0.00
family:LINE/L1	548775	517469007	16.60
family:LINE/L1-Tx1	142	47002	0.00
family:LINE/L2	387632	111052904	3.56
family:LINE/Penelope	1061	95738	0.00
family:LINE/RTE-BovB	7952	1310459	0.04
family:LINE/RTE-X	11261	3512084	0.11
family:LTR/ERV1	112948	85558940	2.74
family:LTR/ERVK	7749	9164658	0.29
family:LTR/ERVL	115261	57740531	1.85
family:LTR/ERVL-MaLR	259011	111693337	3.58
family:LTR/Gypsy	18844	5055132	0.16
family:RC/Helitron	1799	439148	0.01
family:Retroposon/SVA	5055	4299208	0.14
family:SINE/5S-Deu-L2	2439	270161	0.01
family:SINE/Alu	1165242	312492837	10.02
family:SINE/MIR	550626	84422090	2.71
family:SINE/tRNA	2208	272197	0.01
family:SINE/tRNA-Deu	608	63492	0.00
family:SINE/tRNA-RTE	5287	698199	0.02
nonTE:Low_complexity	101062	6394963	0.21
nonTE:Satellite	72874	159450229	5.12
nonTE:Simple_repeat	746725	99208631	3.18
nonTE:Unknown	4568	897881	0.03
nonTE:Unspecified	153	20631	0.00
nonTE:rRNA	2291	1731591	0.06
nonTE:scRNA	1731	183965	0.01
nonTE:snRNA	4913	453928	0.01
nonTE:srpRNA	1282	263043	0.01
nonTE:tRNA	1990	120624	0.00
# L1HS hits >= 6000 bp	320
# any L1 hits >= 6000 bp	7566