| Window | Nominal bp | Usable bp | Panel root | Scaled sapiens root | All-three half-distance | Pair |
| --- | ---: | ---: | ---: | ---: | ---: | --- |
| whole | 16569 | 16537 | 50.241 | 57.100 | 180.415 | human-denisovan |
| control | 1122 | 1099 | 13.556 | 15.406 | 26.312 | neanderthal-denisovan |
| hvr1 | 360 | 350 | 6.926 | 7.872 | 14.565 | neanderthal-denisovan |
| hvr2 | 316 | 303 | 5.259 | 5.977 | 4.958 | neanderthal-denisovan |
| hvr12 | 676 | 653 | 12.185 | 13.849 | 19.524 | neanderthal-denisovan |
| rest | 446 | 446 | 1.370 | 1.557 | 6.788 | neanderthal-denisovan |
| coding | 15447 | 15438 | 36.685 | 41.694 | 158.208 | human-denisovan |
| howell1996 | 1194 | 1171 | 13.593 | 15.448 | 26.812 | neanderthal-denisovan |
| heyer | 673 | 650 | 12.185 | 13.849 | 19.524 | neanderthal-denisovan |
| sigurdardottir | 675 | 652 | 12.185 | 13.849 | 19.524 | neanderthal-denisovan |
| connell_hvr2 | 315 | 302 | 5.259 | 5.977 | 4.958 | neanderthal-denisovan |
| connell_rest | 447 | 447 | 1.370 | 1.557 | 6.788 | neanderthal-denisovan |
| forster | 579 | 556 | 12.000 | 13.638 | 17.298 | neanderthal-denisovan |
| cavelier | 501 | 501 | 0.444 | 0.505 | 2.794 | human-neanderthal |
| regression50 | 16519 | 16519 | 50.241 | 57.100 | 180.415 | human-denisovan |